Partners Healthcare Center for Personalized Genetic Medicine
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Price List

SNP Analysis using Sequenom MassARRAY Genotyping

The price per genotype is dependant on the size of the plex designed. We are presently able to run up to 40-plex assays.

Start-up Costs for both hME and iPLEX Sequenom Genotyping cover all assay design and oligo ordering costs. Oligos are purchased on a per project basis. If existing assays are requested at a later date, the oligos must be repurchased and charged at the prices listed below, depending on the size of project to be genotyped.
  • $22.00 per SNP assay for up to 1152 samples (12 X 96-well plates)
  • $24.00 per SNP assay for between 1153-2688 samples (13 to 28 X 96-well plates)
  • $26.00 per SNP assay for between 2689-6912 samples (28 to 72 X 96-well plates)
  • $38.00 per SNP assay for more than 2913 samples (73 or more X 96-well plates)
Sequenom iPLEX Genotyping

The price per genotype is dependant on the size of the plex designed. We are presently able to run up to 40-plex assays.

E.g.
Plexes
20
25
30
35
40
Cost /genotype $0.24 $0.19 $0.16 $0.14 $0.12

Please contact us for project specific pricing.

Projects with between 1 and 48 samples can be accommodated in the lab, in this case we charge $4.27 per well assayed then $184 per 384-pad chip used. Please contact the lab to get a quote for this type of project.

Sequenom hME Genotyping

When orders containing more than 20 SNPs are received, which are still required to be run using the hME chemistry and not the iPLEX chemistry, the cost is $0.35 per genotype regardless of the size of plex (excluding projects with majority singleplex assays).

If less than 20 SNPs are submitted then the cost per genotype follows the sliding scale below. The increased price is due to the fact that a smaller SNP set usually leads to lower plex sizes, which results in an increased cost per SNP-genotype.

Number of SNPs / plex
Cost / genotype
1 $1.50
2 $0.75
3 $0.50
4 $0.38
5 $0.30
6 $0.25
7 $0.22
8 $0.19

Please contact us to discuss the design and preparations for your project.

Custom SNP analysis by Illumina BeadStation GoldenGate Genotyping

Illumina genotyping can be carried out using either 96-well sentrix array matrices (SAM's) or 16-well Bead Chips. Prices differ between SAM's and BeadChips, so please contact the lab for an accurate quote depending on your project design. All prices below are calculated assuming that SAM's are used.

All Illumina projects are priced on an individual basis due to the different Illumina discounts received on a per project basis. Please contact the lab for a quote.

Plexes
1536-plex
768-plex
384-plex
Cost / sample $120.00 $92.00 $75.00
Cost / genotype $0.08 $0.12 $0.20

Cost estimates shown here are based on a 10-plate (960 sample) project on SAMs, and are derived from most recent pricing and available discounts from Illumina. These prices may serve for planning purposes and reflect our best estimates of all costs associated with the process. Start up and turn around times include design and ordering of OPA pools are dependent on delivery of your SNP lists, DNA samples, return of OPA panels from Illumina, and the current queue of projects in the system.

Standard SNP Panel analysis by Illumina BeadStation GoldenGate Genotyping

Illumina genotyping can be carried out using either 96-well sentrix array matrices (SAM's) or 16-well Bead Chips. Prices differ between SAM's and BeadChips, so please contact the lab for an accurate quote depending on your project design. All prices below are calculated assuming that SAM's are used.

All Illumina projects are priced on an individual basis due to the different Illumina discounts received on a per project basis. Please contact the lab for a quote.
Plexes Linkage Panel MHC Panel Set Human DNA Test Panel Cancer Panel Mouse LD Panel Mouse MD Panel
# SNPs 6008 2360 360 1440 377 1449
Cost /sample $288 $162 $71 $105 $71 $84
Cost /genotype $0.05 $0.07 $0.20 $0.07 $0.19 $0.06

Cost estimates shown here are based on a 10-plate (960 sample) project on SAM's, and are derived from most recent pricing and available discounts from Illumina. These prices may serve for planning purposes and reflect our best estimates of all costs associated with the process.

Standard Infinium Chip analysis by Illumina BeadStation Infinium Genotyping

All Illumina projects are priced on an individual basis due to the different Illumina discounts received on a per project basis. Please contact the lab for a quote.

Plexes Hap370CNV-Quad Hap610-Quad Hap650Y Hap1M Hap1M-Duo
# samples per chip 4 samples
4 samples
1 sample
1 sample
2 samples
DNA (ng) per sample 200 ng
200 ng
750 ng
750 ng
400 ng
# Markers 370,404
620,901
660,918
1,072,820
1,072,820
# DGV regions 79K markers in 3,034 regions 184K SNPs in 3,900 CNV regions 115K markers in 3026 regions 207K markers in 3298 regions 350K markers in 4253 regions
Cost /sample $490 $553 $800 $1000 $900

DGV = Toronto Database of Genetic variants

Cost estimates shown here are based on a 1000 sample project, and are derived from most recent pricing and available discounts from Illumina. These prices may serve for planning purposes and reflect our best estimates of all costs associated with the process.



Partners HealthCare Center for Personalized Genetic Medicine

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